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banking reconciliations in quickbooks desktop can be undone, as long as it finds previous reconciles having been completed. If not, then it will flag there weren't any previous reconciliations to be found. As always make a backup of your quickbooks company file before doing any reconciliation or unreconciliation.

How to undo a previous reconcile in QuickBooks Desktop (unreconcile)

Sometimes you’ll find that your balance in QuickBooks does not match your bank statement after a monthly reconciliation (you are doing your reconciliations monthly, right?) and that you need to undo your previous reconciliation to get to the bottom of things. Prior to undoing a reconcile, we recommend a backup AND printing out your previous reconciliation reports, just in case you need them for historical data. To print these reports, we want to open Banking>Reconcile>locate discrepancies>previous reports. We suggest printing out the detailed and the summary, as you might need both.

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